MmuEX7000061 @ mm10
Exon Skipping
Gene
ENSMUSG00000026131 | Dst
Description
dystonin [Source:MGI Symbol;Acc:MGI:104627]
Coordinates
chr1:33908225-33968903:+
Coord C1 exon
chr1:33908225-33908452
Coord A exon
chr1:33908999-33909033
Coord C2 exon
chr1:33968703-33968903
Length
35 bp
Sequences
Splice sites
3' ss Seq
TTTCCCTCTTTTCTCCCCAGATG
3' ss Score
13.85
5' ss Seq
GAGGTAATT
5' ss Score
8.88
Exon sequences
Seq C1 exon
CTGCAGCCTTAGCCCCGCGCCGCACGGCCCCCCGCCTCGCCCGCACCATGATCGCCGCCGCTTTCCTCGTTTTGCTGAGACCCTACAGCATCCAATGTGCTCTCTTCCTCTTGTTGCTCCTGCTGGGCACCGTCGCCACCATCGTCTTCTTCTGCTGCTGGCACCGCAAGCTCCAGAAAGGGAGACATCCGATGAAATCGGTCTTTTCGGGTCGTTCCAGAAGCAGAG
Seq A exon
ATGCTGCTCTGAGATCTCATCACTTTCGCTCTGAG
Seq C2 exon
GGGTTCCGAGCAAGCCCCCGACACATCAGGAGGCGAGTTGCAGCGGCCGCAGCTGCCCGGCTTGAAGAAGTGAAGCCTGTGGTGGAAGTCCATCATCAGAGTGAACAAGAGTCATCGGGGAGGAAGCGAAGGATCAAGAAAAACAGCCGGGTGCAGCCAGAATTCTATCACTCTGTTCAAGGTGCTTCCACCAGAAGGCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026131-'0-5,'0-0,1-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.082 A=0.000 C2=0.597
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCTTTTCGGGTCGTTCCAG
R:
GACTTCCACCACAGGCTTCAC
Band lengths:
119-154
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types