DreEX0067012 @ danRer10
Exon Skipping
Gene
ENSDARG00000102406 | si:ch211-165e15.1
Description
si:ch211-165e15.1 [Source:ZFIN;Acc:ZDB-GENE-081028-59]
Coordinates
chr13:1299803-1302431:+
Coord C1 exon
chr13:1299803-1299983
Coord A exon
chr13:1300294-1300328
Coord C2 exon
chr13:1302255-1302431
Length
35 bp
Sequences
Splice sites
3' ss Seq
ATCATTCCCATTTGTTCTAGAAG
3' ss Score
7.37
5' ss Seq
GAGGTAAAT
5' ss Score
8.39
Exon sequences
Seq C1 exon
ATGATCGCTGCGGCTTTCCTGGTCTTATTGAGACCCTTAAGTCTTCAGTGTGTGTTATTGCTGCTGCTGCTTTTAATAGGAACTATCGCCACCGTGCTCTTTCTGTGCTGTTGGCACCGCAAGCTCCGCAATGAGAAAATCCCTATAAAATCTGTGCTCTCCAGGCGCTCCAGGAGTCGCG
Seq A exon
AAGCTGGTTTCCGGCCGCATCATTTTCGCTCTGAG
Seq C2 exon
GTGTGTCGTCACAGTCCTCGTCATGTGAGGAGAAGCGCACGTGCGCGCGTGTCCGAAGAGAAGCCGCTGGTCGAGAGCGAGCCTGACTCGAGCGCATCCGTGAGGAAACGCAGAGTAAAGAAGAGAGTCCAGCCGGAGTTTTACCACACTGTGCAGCTCACACCAACACGAAAACCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000102406-'0-2,'0-0,1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.644
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTATCGCCACCGTGCTCTTTC
R:
CACATGACGAGGACTGTGACG
Band lengths:
126-161
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]