HsaEX6047838 @ hg38
Exon Skipping
Gene
ENSG00000151914 | DST
Description
dystonin [Source:HGNC Symbol;Acc:HGNC:1090]
Coordinates
chr6:56900421-56954628:-
Coord C1 exon
chr6:56954407-56954628
Coord A exon
chr6:56953785-56953819
Coord C2 exon
chr6:56900421-56900621
Length
35 bp
Sequences
Splice sites
3' ss Seq
TTTATCTCTTTTCTCCCCAGATG
3' ss Score
13.11
5' ss Seq
GAGGTAATT
5' ss Score
8.88
Exon sequences
Seq C1 exon
CTCCAGCCCCGCCGTCGAGTCGCCCTCGCCTCGCCCGCACCATGATCGCCGCGGCTTTCCTCGTCTTGCTGAGACCCTACAGCATCCAATGTGCCCTCTTCCTCTTGTTGCTTCTGCTGGGCACCATCGCCACCATCGTCTTCTTCTGCTGCTGGCACCGCAAGCTCCAGAAAGGGAGGCATCCGATGAAATCGGTCTTCTCGGGTCGTTCAAGAAGCCGAG
Seq A exon
ATGCTGTTTTGAGATCGCACCACTTTCGTTCTGAG
Seq C2 exon
GGATTCAGAGCAAGCCCTCGGCATCTTAGAAGACGAGTTGCAGCGGCCGCAGCTGCCCGTCTGGAAGAAGTGAAGCCCGTGGTGGAAGTTCACCATCAGAGTGAGCAAGAAACTTCAGTGAGGAAACGAAGAATCAAGAAGAGCAGCCGAGTCCAGCCAGAATTTTATCACTCTGTTCAAGGTGCTTCAATCAGGAGGCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000151914_CASSETTE11
Average complexity
S*
Mappability confidence:
100%=50=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.090 A=0.000 C2=0.485
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAATCGGTCTTCTCGGGTCG
R:
GGCTTCACTTCTTCCAGACGG
Band lengths:
112-147
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains