HsaALTD1030089-2/3 @ hg38
Alternative 5'ss
Gene
ENSG00000160293 | VAV2
Description
vav guanine nucleotide exchange factor 2 [Source:HGNC Symbol;Acc:HGNC:12658]
Coordinates
chr9:133925851-133926327:-
Coord C1 exon
chr9:133926247-133926327
Coord A exon
chr9:133926216-133926246
Coord C2 exon
chr9:133925851-133925948
Length
31 bp
Sequences
Splice sites
5' ss Seq
ATTGTACGT
5' ss Score
5.63
3' ss Seq
GGTTAATTGTTTCTCCCCAGTGC
3' ss Score
7.41
Exon sequences
Seq C1 exon
GACTTGGCTCTGGGAAGAGGGGCCTCTGGGTGGCAGTGGTGGCAGCAGCCCACGCTTCAGGACGCACTAGGAGCAGAGGAG
Seq A exon
GTGTGCTCAGGCCCTGCCATTGTTTCTCATT
Seq C2 exon
TGCCCCCAAGACATTAATTGTGTCTGTTGGAGCCTGACAATTTGATGTTTGCAGCAAAAAAGCCAAATGAGACCAAGAAGGAGAAAAGAAAAAAAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160293-16-9,17-9,18-9-2/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTTGGCTCTGGGAAGAGGG
R:
GTCAGGCTCCAACAGACACAA
Band lengths:
119-150
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains