HsaEX1043407 @ hg38
Exon Skipping
Gene
ENSG00000160293 | VAV2
Description
vav guanine nucleotide exchange factor 2 [Source:HGNC Symbol;Acc:HGNC:12658]
Coordinates
chr9:133861374-133926327:-
Coord C1 exon
chr9:133926216-133926327
Coord A exon
chr9:133925843-133925948
Coord C2 exon
chr9:133861374-133861432
Length
106 bp
Sequences
Splice sites
3' ss Seq
GGTTAATTGTTTCTCCCCAGTGC
3' ss Score
7.41
5' ss Seq
AGTGTAAGT
5' ss Score
8.46
Exon sequences
Seq C1 exon
GACTTGGCTCTGGGAAGAGGGGCCTCTGGGTGGCAGTGGTGGCAGCAGCCCACGCTTCAGGACGCACTAGGAGCAGAGGAGGTGTGCTCAGGCCCTGCCATTGTTTCTCATT
Seq A exon
TGCCCCCAAGACATTAATTGTGTCTGTTGGAGCCTGACAATTTGATGTTTGCAGCAAAAAAGCCAAATGAGACCAAGAAGGAGAAAAGAAAAAAAAATACCAAAGT
Seq C2 exon
GTCATCTCCGCGGTGTCGAGGCTCTCCCTGCACAGCATCGCGCAGAACAAAGGGATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160293_MULTIEX4-4/5=3-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Inclusion Isoform:
ENST00000371850fB29698
Main Skipping Isoform:
ENST00000371850fB7688
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTTGGCTCTGGGAAGAGGG
R:
CTGATCCCTTTGTTCTGCGCG
Band lengths:
171-277
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains