HsaALTD1032347-2/2 @ hg38
Alternative 5'ss
Gene
ENSG00000164796 | CSMD3
Description
CUB and Sushi multiple domains 3 [Source:HGNC Symbol;Acc:HGNC:19291]
Coordinates
chr8:112587066-112637005:-
Coord C1 exon
chr8:112636825-112637005
Coord A exon
chr8:112636817-112636824
Coord C2 exon
chr8:112587066-112587235
Length
8 bp
Sequences
Splice sites
5' ss Seq
TGGGTACGT
5' ss Score
7.7
3' ss Seq
ATATTCTGTTTTACCTGCAGCTG
3' ss Score
11.36
Exon sequences
Seq C1 exon
AATATAACCTTGAACCTTGTGAAGATCCTGGCATTCCTCAATATGGTAGTCGAATCGGGTTCAACTTTGGGATTGGTGACACTCTGACCTTCTCATGCTCTTCGGGTTATCGACTGGAAGGAACATCAGAGATCATCTGTCTTGGTGGTGGCCGACGAGTGTGGAGTGCACCTCTGCCAAG
Seq A exon
GTGTGTGG
Seq C2 exon
CTGAATGTGGTGCATCTGCAACGAATAATGAAGGAATTTTGCTGTCTCCAAATTATCCACTCAACTATGAAAACAACCATGAATGCATTTATAGTATTCAGGTTCAAGCAGGAAAGGGAATCAATATTTCAGCCAGAACATTTCATTTAGCACAAGGAGATGTTCTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000164796-44-51,45-51-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=87.5)
A:
NA
C2:
PF0043115=CUB=PU(50.9=94.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCATCTGTCTTGGTGGTGGC
R:
TGGAGACAGCAAAATTCCTTCA
Band lengths:
100-108
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains