GgaALTD0006243-2/2 @ galGal3
Alternative 5'ss
Gene
ENSGALG00000016111 | CSMD3
Description
NA
Coordinates
chr2:139167948-139172102:-
Coord C1 exon
chr2:139171922-139172102
Coord A exon
chr2:139171914-139171921
Coord C2 exon
chr2:139167948-139168117
Length
8 bp
Sequences
Splice sites
5' ss Seq
TGGGTACGT
5' ss Score
7.7
3' ss Seq
ACATTTTGTTTTACCTGCAGCTG
3' ss Score
10.69
Exon sequences
Seq C1 exon
AGTATAATCTTGAACCTTGTGAAGATCCAGGAATCCCACAGTTTGGTAACAGAGTAGGATTTAATTTTGGAGTGGGAGATACTCTGACGTACTCCTGTTCATCTGGATATCGTTTAGAAGGAACTTCAGAGATTATCTGTCTTGGTGGTGGCCGACGAGTATGGAGTGCACCTCTGCCAAG
Seq A exon
GTGTGTGG
Seq C2 exon
CTGAATGTGGAGCCTCCACAACAAATAATGAAGGGATTTTACTGTCCCCCAATTATCCTCTTAACTATGAAAACAACCATGAATGTATTTATAGCATTCAGGTACAAGCAGGGAAAGGAATAAACATTTCTGCCAGAACATTTCATTTAGCTCAAGGAGATGTTCTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016111-21-22,22-22-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=87.5)
A:
NA
C2:
PF0043115=CUB=PU(50.9=94.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCCGACGAGTATGGAGTG
R:
AGAGGATAATTGGGGGACAGT
Band lengths:
94-102
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]