DreALTD0000830-2/2 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000077920 | CSMD3
Description
CUB and Sushi multiple domains 3 [Source:HGNC Symbol;Acc:HGNC:19291]
Coordinates
chr19:44883492-44915478:-
Coord C1 exon
chr19:44915298-44915478
Coord A exon
chr19:44915290-44915297
Coord C2 exon
chr19:44883492-44883661
Length
8 bp
Sequences
Splice sites
5' ss Seq
TGGGTACGT
5' ss Score
7.7
3' ss Seq
TTTATATTTCCTTTCTCTAGCTG
3' ss Score
9.67
Exon sequences
Seq C1 exon
AATACAACCTTGAGCCGTGTGAGGATCCAGGTGTGCCGCATTACGGGCGGCGTAACGGATACAGCTTCGGTATCGGAGACACTCTGACCTTCTCCTGCAATCTGGGCTACCGTCTGGAGGGAGCACCGGAAATCATCTGCCTGGGAGGAGGGCGGCGCATGTGGAGCGCACCTCTGCCAAG
Seq A exon
GTGTGTGG
Seq C2 exon
CTGAGTGCGGCTCTTCTGTCATCAACAATGAAGGGATTCTGCTGTCACCCAATTACCCCATGAACTACGAGAACAACCACGAGTGCATTTACAGCATACAGGTGCAGGCTGGGAAAGGAATCAACATTTCGGCTAGAACCTTCCATCTGGCACAGGGGGACATCCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077920-17-19,18-19-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=87.5)
A:
NA
C2:
PF0043115=CUB=PU(50.9=93.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGGAGCACCGGAAATCATC
R:
TGTTGATGACAGAAGAGCCGC
Band lengths:
92-100
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]