HsaALTD1032854-2/2 @ hg38
Alternative 5'ss
Gene
ENSG00000165699 | TSC1
Description
tuberous sclerosis 1 [Source:HGNC Symbol;Acc:HGNC:12362]
Coordinates
chr9:132900715-132901699:-
Coord C1 exon
chr9:132901631-132901699
Coord A exon
chr9:132901589-132901630
Coord C2 exon
chr9:132900715-132900837
Length
42 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
TGCTCATGTTTTTTGGTTAGCTC
3' ss Score
5.09
Exon sequences
Seq C1 exon
ACGAAGCTGGAGGACTGCAGGAACATGATTGCGGAGCTGCGGATAGAACTGAAGAAGGCCAACAACAAG
Seq A exon
GTGTGTCACACTGAGCTGCTGCTCAGTCAGGTTTCCCAAAAG
Seq C2 exon
CTCTCAAACAGTGAGTCGGTCCAGCAGCAGATGGAGTTCTTGAACAGGCAGCTGTTGGTTCTTGGGGAGGTCAACGAGCTCTATTTGGAACAACTGCAGAACAAGCACTCAGATACCACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000165699-44-47,45-47-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.146
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGGACTGCAGGAACATGA
R:
ATAGAGCTCGTTGACCTCCCC
Band lengths:
146-188
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains