RnoALTD0032100-2/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000011470 | Tsc1
Description
TSC complex subunit 1 [Source:RGD Symbol;Acc:620124]
Coordinates
chr3:7260140-7260961:+
Coord C1 exon
chr3:7260140-7260238
Coord A exon
chr3:7260239-7260250
Coord C2 exon
chr3:7260839-7260961
Length
12 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
TTCTCACTTCCGCCTGGCAGCTC
3' ss Score
8.49
Exon sequences
Seq C1 exon
ACGAAGCTGGAGGACTGCAGAAGCATGATCGCGGAGCTTCGAGTGGAGCTGAAGAAGGCCAACAGCAAGGTGTGCCACACCGAGCTGCTGCTCAGCCAG
Seq A exon
GTCTCTCAGAAG
Seq C2 exon
CTCTCCAATAGTGAGTCAGTGCAGCAGCAGATGGAGTTCTTGAATAGGCAGCTTCTGGTGCTCGGGGAGGTCAATGAGCTGTACCTGGAGCAGCTGCAGAGCAAGCATCCTGACACCACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011470-27-30,28-30-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.146
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTTCGAGTGGAGCTGAAGA
R:
AAGAACTCCATCTGCTGCTGC
Band lengths:
106-118
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]