HsaALTD1033668-3/4 @ hg38
Alternative 5'ss
Gene
ENSG00000167100 | SAMD14
Description
sterile alpha motif domain containing 14 [Source:HGNC Symbol;Acc:HGNC:27312]
Coordinates
chr17:50117407-50118327:-
Coord C1 exon
chr17:50118190-50118327
Coord A exon
chr17:50118161-50118189
Coord C2 exon
chr17:50117407-50117695
Length
29 bp
Sequences
Splice sites
5' ss Seq
AAGGTTGGG
5' ss Score
4.94
3' ss Seq
GCGGCTGCCCCCTCGTCCAGGTG
3' ss Score
8.22
Exon sequences
Seq C1 exon
ACCTGGACTTGGCTGTGCCAGAGACGGCCAGACTGGACAGCAGTTTACACAAGGCCCGGGCCCAACTGTTGGCCAAGGGCCGGAGACACCGGCCATCCCGCTCCAGGCTTCGGGACAGTGCCAGCTCCGCGGAGGATG
Seq A exon
GTGAAGGCTCGGATGGGCCCGGAGGCAAG
Seq C2 exon
GTGACCGATGGCTGCGGGAGCCCCCTGCACCGGCTGCGCTCGCCTTTGCACTCAGGCCCGGGGTCCCCGGCCGGGGGCTCTTTCTGCCTGGATCCTCCGGGGTTGCGGCGCAGCCTGGACGAGGACGAGCCGCCGCCCTCGCCGCTCACACGCTACCGGCCCCTGCACAACGCTGCGTCGCACGAGGGCCTGGCCGCCGCCTCCTGCTCTCCGCCGCGCTCCGCGCCCTCCTCCGACAGCTCCCCCAGCTTCGTGCGCCGCCACCCGCGCGCAGAGCCGCACAGCGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167100-9-9,10-9,11-9,12-9-3/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.988 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCGGGACAGTGCCAGCTC
R:
GAGGATCCAGGCAGAAAGAGC
Band lengths:
127-156
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains