RnoALTD0026494-3/5 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000004155 | Samd14
Description
sterile alpha motif domain containing 14 [Source:RGD Symbol;Acc:1306138]
Coordinates
chr10:82829043-82829857:+
Coord C1 exon
chr10:82829043-82829137
Coord A exon
chr10:82829138-82829166
Coord C2 exon
chr10:82829569-82829857
Length
29 bp
Sequences
Splice sites
5' ss Seq
AAGGTTGGG
5' ss Score
4.94
3' ss Seq
AACCACTGCCTCTCTTCCAGGTG
3' ss Score
9.86
Exon sequences
Seq C1 exon
CTTACACAAAGCCAGGGCTCAGCTGCTGGTCAAGGGTCGGAGACACCGGCCTTCCCGCTCCAGGCTACGTGACAGTACCAGCTCTGCTGAGGACG
Seq A exon
GTGAAGGCTCTGATGGGCCCGGAGGCAAG
Seq C2 exon
GTGACCGACGGCTGCGGTAGCCCGCTGCACCGGCTGCGCTCGCCTTTGCACTCGGGCCCAGGCTCCCCAGCCGGCGGCTCTTTCTGCCTGGAGCCACCGGGCTTGAGGCGCAGTCTGGATGAGGACGAGCCGCCGCCCTCGCCACTCGCTCGGTATCGGCCCCTGCACAACGCCGCCTCGCATGAGGGCCTGGCTGCCACCTCCGGCTCGCCACCGCGCTCCGCACCCTCCTCCGACAGCTCCCCCAGCTTCGTGCGTCGCTACCCTCGAGCAGAGCCGCACAGCGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004155-4-6,5-6,6-6,7-6,8-6-3/5
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.833 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTACGTGACAGTACCAGCTC
R:
GGCTCCAGGCAGAAAGAGC
Band lengths:
127-156
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]