HsaALTD1034249-2/2 @ hg38
Alternative 5'ss
Gene
ENSG00000168026 | TTC21A
Description
tetratricopeptide repeat domain 21A [Source:HGNC Symbol;Acc:HGNC:30761]
Coordinates
chr3:39112458-39114742:+
Coord C1 exon
chr3:39112458-39112580
Coord A exon
chr3:39112581-39112647
Coord C2 exon
chr3:39114585-39114742
Length
67 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCC
5' ss Score
8.63
3' ss Seq
TTCTGTCTGGCTCCCAACAGGCA
3' ss Score
10.04
Exon sequences
Seq C1 exon
GCCTATGTGCTCAGAGGCTGGGTGGACCTGACCTCAGACAAGCCCCACACTGCGAAGAAAGCCATTGAGTACCTGGAACAAGGAATTCAGGACACCAAAGATGTGCTGGGGCTGATGGGAAAG
Seq A exon
GTGGGCAGTGGAAAAGGGAGAGGTGGAAGTATTCCTGGCCAGGCCACTGGAACCAGAGACCCACCAG
Seq C2 exon
GCAATGTACTTCATGATGCAGCAGAACTACTCAGAGGCCCTGGAGGTGGTGAACCAGATCACTGTGACTTCAGGGAGCTTCCTGCCAGCCCTCGTCCTGAAGATGCAGCTGTTCTTAGCTCGGCAGGACTGGGAGCAGACAGTAGAAATGGGACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000168026-9-7,10-7-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.104
Domain overlap (PFAM):
C1:
PF134241=TPR_12=PD(20.0=24.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGATGTGCTGGGGCTGATG
R:
TACTGTCTGCTCCCAGTCCTG
Band lengths:
171-238
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains