HsaEX0067818 @ hg38
Exon Skipping
Gene
ENSG00000168026 | TTC21A
Description
tetratricopeptide repeat domain 21A [Source:HGNC Symbol;Acc:HGNC:30761]
Coordinates
chr3:39110851-39114742:+
Coord C1 exon
chr3:39110851-39111017
Coord A exon
chr3:39112458-39112580
Coord C2 exon
chr3:39114585-39114742
Length
123 bp
Sequences
Splice sites
3' ss Seq
TCATCTTGTTCTCATCCCAGGCC
3' ss Score
8.12
5' ss Seq
AAGGTGGGC
5' ss Score
7.93
Exon sequences
Seq C1 exon
ACCGAGAAGCAATTCAGGAGCTTGAGTACAGCCTGAAGGAAATACGCAAGACAGTCAGTGGGACTGCACTGTACTATGCTGGCCTTTTCCTCTGGCTCATAGGCCGCCATGACAAGGCCAAAGAGTACATTGACCGCATGCTGAAGATTTCTAGAGGCTTCAGAGAG
Seq A exon
GCCTATGTGCTCAGAGGCTGGGTGGACCTGACCTCAGACAAGCCCCACACTGCGAAGAAAGCCATTGAGTACCTGGAACAAGGAATTCAGGACACCAAAGATGTGCTGGGGCTGATGGGAAAG
Seq C2 exon
GCAATGTACTTCATGATGCAGCAGAACTACTCAGAGGCCCTGGAGGTGGTGAACCAGATCACTGTGACTTCAGGGAGCTTCCTGCCAGCCCTCGTCCTGAAGATGCAGCTGTTCTTAGCTCGGCAGGACTGGGAGCAGACAGTAGAAATGGGACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000168026_MULTIEX1-4/4=3-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.007 A=0.000 C2=0.104
Domain overlap (PFAM):
C1:
PF134241=TPR_12=PU(76.0=67.9)
A:
PF134241=TPR_12=PD(20.0=24.4)
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCACTGTACTATGCTGGCC
R:
TACTGTCTGCTCCCAGTCCTG
Band lengths:
248-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development