MmuEX6069874 @ mm9
Exon Skipping
Gene
ENSMUSG00000032514 | Ttc21a
Description
tetratricopeptide repeat domain 21A [Source:MGI Symbol;Acc:MGI:1921302]
Coordinates
chr9:119850251-119853092:+
Coord C1 exon
chr9:119850251-119850417
Coord A exon
chr9:119851690-119851812
Coord C2 exon
chr9:119852935-119853092
Length
123 bp
Sequences
Splice sites
3' ss Seq
TCCCCTTGTTCTTGTCCCAGGGC
3' ss Score
9.44
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
ACATAGAAGCAGTTCAGGAACTGGAGAGCAGCTTGAAGGAAATTCGCAGGTCAGCCAGCAGCACTGCTCTGTACTACGCCAGCCTCTTCCTCTGGTTCATGGGTCACCACGACAAGGCCAGGGAGTATGTTGACCACATGTTGAAGGTCTCCAGCGGCTCCAAAGAG
Seq A exon
GGCTATGTGCTCAAAGGCTGGGTGGACCTTACCTCCAGTAAACCCCACGTTGTGAAGAAATCCATCAAGTACCTGGAACAAGGAACTCAAGACACCAAAGATGTGCTAGGGCTCATGGGCAAG
Seq C2 exon
GCAACGTACTTCATGACACAACAGAACTTCTCTGGGGCCCTGGAGGTGGCGAACCAGGTCACCTTGGCCTGCAGCAACTTCCTGCCCGCTTTAGTCCTGAAGATGAAGCTGTTCCTGGCTCGGCAGGATTGGGATCAGACGATAGAAACCGGACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032514-'4-4,'4-3,5-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGGAGAGCAGCTTGAAGGA
R:
CTTCAGGACTAAAGCGGGCAG
Band lengths:
250-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: