DreEX0081915 @ danRer10
Exon Skipping
Gene
ENSDARG00000012368 | ttc21b
Description
tetratricopeptide repeat domain 21B [Source:ZFIN;Acc:ZDB-GENE-031010-34]
Coordinates
chr9:50156106-50159803:-
Coord C1 exon
chr9:50159637-50159803
Coord A exon
chr9:50157076-50157198
Coord C2 exon
chr9:50156106-50156263
Length
123 bp
Sequences
Splice sites
3' ss Seq
ACTCAAACATTGTTTTGTAGGGA
3' ss Score
5.73
5' ss Seq
AAGGTAATT
5' ss Score
8.83
Exon sequences
Seq C1 exon
ATCGTGAAATCATACAGGATCTGGATGGACGGGTGAAGGAGGAGAGGAAAACGGCGAGTCCTAAAGCACTGTATTACGCGGGCATGCTGCTGTGGCTTCTGGGCCGCAATGACAAAGCAAGAGAGTATGTGGACAGAATGATCAAGATCTCCAGTGGCTCAAAAGAG
Seq A exon
GGAATTGTGCTAAAAGGCTGGATTGACCTGCGATCTAATAAAGATGCTTATGCAAAGAAGTCCGGGAAATACTTTGACGAAGCCTTGAAGGAGAAAAGTGACATTTTTGCTCTGATGGGGAAG
Seq C2 exon
GTTCATTATTATGAATATCGCCAGAATTATTCTGGTGCTTTAGACACCATTAACCAGGTGATTGTGAGTTACCCGTCCTTTCTACCGGCTCTGGTGAAGAAGATGAAGCTGCTGTTGACTCTGCAGGACTGGGAACAAACTGTGGATGCAGCTCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000012368_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.089 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0771912=TPR_2=WD(100=60.7)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAACGGCGAGTCCTAAAGCAC
R:
TTCCCAGTCCTGCAGAGTCAA
Band lengths:
254-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]