RnoEX6017148 @ rn6
Exon Skipping
Gene
ENSRNOG00000005868 | Ttc21b
Description
tetratricopeptide repeat domain 21B [Source:RGD Symbol;Acc:1565122]
Coordinates
chr3:52343119-52352230:-
Coord C1 exon
chr3:52352064-52352230
Coord A exon
chr3:52350356-52350478
Coord C2 exon
chr3:52343119-52343276
Length
123 bp
Sequences
Splice sites
3' ss Seq
GTACGATCTTTCTTTACCAGGGA
3' ss Score
8.28
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
ATAGAGAAGCTATCCTGGAATTAGATACCAAAATGAAGGAGCAACGTAAGGAAGCCGGACGCAAAGCCTTGTACCATGCAGGCCTGTTTCTGTGGCACATTGGTCGCCATGATAAGGCGAGAGAATATATTGACAGAATGTCAAAAATGCCACATGATAGCAATGAG
Seq A exon
GGACCGATTTTGAAAGCATGGCTTGATATTACAAGAGGGAAGGAACCTTATGCTAAAAAAGCCCTACGGTATTTTGAGGAGGGATTACAAGATGGAAACGATATTTTTGCTCTGCTGGGTAAG
Seq C2 exon
GTACTGTGCCTTGAGATGCGACAGAATTATTCTGGAGCTCTGGAGACTGTGAGTCAGATAATTGTGAACTTCCCGAGCTTCCTTCCTGCTTTTGAGAAGAAAATGAAATTACAACTGGCTTTGCAGGATTGGGATCAGACGGTGGAGACGGCGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005868-'6-6,'6-5,8-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.196 A=0.000 C2=0.004
Domain overlap (PFAM):
C1:
PF134241=TPR_12=PU(54.3=67.9)
A:
PF134241=TPR_12=PD(42.9=73.2)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACGCAAAGCCTTGTACCAT
R:
ATCCCAATCCTGCAAAGCCAG
Band lengths:
246-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]