BtaEX6009394 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016512 | TTC21B
Description
Bos taurus tetratricopeptide repeat domain 21B (TTC21B), mRNA. [Source:RefSeq mRNA;Acc:NM_001102108]
Coordinates
chr2:30442925-30450262:+
Coord C1 exon
chr2:30442925-30443091
Coord A exon
chr2:30445203-30445325
Coord C2 exon
chr2:30450105-30450262
Length
123 bp
Sequences
Splice sites
3' ss Seq
AAGAATTATTTGTTTTACAGGGA
3' ss Score
6.75
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
ATAGAGAAGCTATTCTCGAGTCAGATGCCAGAGTGAAAGAGCAGCGTAAAGGAGCTGGACCAAAAGTTTTGTACCAAGCAGGCTTGTTTTTGTGGCACGTTGGTCGGCATGATAAAGCGAGAGAATATATTGACCGAATGATCAAGATATCAAATGGGAGTAAAGAG
Seq A exon
GGACAGGTTTTGAGAGCATGGCTTGATATTACAAGAAGAAAAGAACCTTATACTAAAAAAGCATTAAGATACTTTGAAGAGGGATTGCAAGATGGGAATGATATTTTTGCTCTACTGGGTAAG
Seq C2 exon
GCACAATGCCTTGAGATGCGCCAGAATTATTCAGGTGCTCTGGAGACTGTGAACGAGATAATCATGAATTTTCCAAGTTTCCTTCCTGCTTTTGTAAAGAAAATGAAACTACAGCTAGCTTTGCAGGACTGGGACCAGACGGTTGAGACAGCACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016512-'4-6,'4-4,6-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.107 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTTGTTTTTGTGGCACGTT
R:
CTCTGTGCTGTCTCAACCGTC
Band lengths:
245-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]