GgaEX1060943 @ galGal3
Exon Skipping
Gene
ENSGALG00000010956 | TTC21B
Description
NA
Coordinates
chr7:21133645-21136433:+
Coord C1 exon
chr7:21133645-21133811
Coord A exon
chr7:21134623-21134745
Coord C2 exon
chr7:21136271-21136433
Length
123 bp
Sequences
Splice sites
3' ss Seq
GAATACAAGTTTTTCTGCAGGGA
3' ss Score
2.44
5' ss Seq
AAAGTATGT
5' ss Score
6.93
Exon sequences
Seq C1 exon
ATCGGGATGCTATTCTAGAGTTGGATACAAAACTGAAGGAGCAACGTAAAACAGCAGGACAGCAGGCTCTTTACTTCGCTGGCTTATTTTTGTGGCATCTTGGTCGTGAAGACAAAGCCCGTGAATACGTTGATAGGGTGATCAAAGTTTCTAATGGAGATAAAGAG
Seq A exon
GGATTGATTCTGAAAGCATGGCTTGATCTCACTTGTGGGAAAGAAACTCATATTAAAAAAGCTTTGAAGTACTTTGATGAAGCGCTTCAGGAAGGGAATGATGTTTTTGCTCTCCTTGGTAAA
Seq C2 exon
GCACAGTATTTTGAGATCCGACAGAATTATTCAGGAGCTCTGGAAATGGTGAACCAGATAATTGCAAACTTTCCAAACTTCATTCCTGCTTTCATAAAGAAAATGAAGCTGCAACTAGCCTTGCAGGACTGGGAGCAGGCAGTTGAAACTGCACATAGGTTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010956-'3-6,'3-5,5-6=AN
Average complexity
A_S
Mappability confidence:
88%=100=75%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.030 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134241=TPR_12=PU(54.9=69.6)
A:
PF134241=TPR_12=PD(42.3=73.2)
C2:
PF145591=TPR_19=PU(75.8=90.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAAAACAGCAGGACAGCAGGC
R:
CCAGTCCTGCAAGGCTAGTTG
Band lengths:
253-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]