RnoEX0094639 @ rn6
Exon Skipping
Gene
ENSRNOG00000034089 | Ttc21a
Description
tetratricopeptide repeat domain 21A [Source:RGD Symbol;Acc:1308806]
Coordinates
chr8:128626390-128630067:+
Coord C1 exon
chr8:128626390-128626556
Coord A exon
chr8:128628599-128628721
Coord C2 exon
chr8:128629910-128630067
Length
123 bp
Sequences
Splice sites
3' ss Seq
TGCCCTTGTTCTCGTCCCAGGGC
3' ss Score
9.47
5' ss Seq
AAGGTGGGC
5' ss Score
7.93
Exon sequences
Seq C1 exon
ACGCAGAAGCAATTCAGGAGCTGGACAGCAGCTTGAAGGAAATTCGCAGGACGGCCAGTGGCATGGCACTGTACTACGCCAGCCTCTTCCTCTGGTTCATGGGTCACCACGACAAGGCCAGGGAGTACGTCGACCACATGTTAAAGGTCTCCAGTGGCTCCAAAGAG
Seq A exon
GGCTACGTGCTCAAAGGCTGGGTGGACCTCACCTCCAATAAACCCCACGTCGTGAAGAAATCCATCAAGTACCTGGAACAAGGAACGCAAGACACCAAAGATGTGCTAGGCCTCATGGGCAAG
Seq C2 exon
GCAAAGTACTTCATGACACAACAGAACTTCTCCGGGGCCCTGGAGGTGGTGAACCAGGTCACCTTGGCCTACAGCAACTTCCTGCCGGCCTTAGTCCTGAAGATGAAACTGTTCCTGGCTCGGCAGGATTGGGAGCAGACAATAGAAACCGGACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000034089-'6-5,'6-4,7-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.019
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGGCACTGTACTACGCCAG
R:
ATTGTCTGCTCCCAATCCTGC
Band lengths:
249-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]