DreEX6096672 @ danRer10
Exon Skipping
Gene
ENSDARG00000102541 | TTC21A
Description
tetratricopeptide repeat domain 21A [Source:HGNC Symbol;Acc:HGNC:30761]
Coordinates
chr24:41153606-41156312:-
Coord C1 exon
chr24:41156146-41156312
Coord A exon
chr24:41154997-41155119
Coord C2 exon
chr24:41153606-41153763
Length
123 bp
Sequences
Splice sites
3' ss Seq
ACTGGTTTCTTTATGATCAGGGT
3' ss Score
6.53
5' ss Seq
AAGGTAAAC
5' ss Score
8.14
Exon sequences
Seq C1 exon
ATGAAGATGCTGTGAATGAGCTGAACTCTGAGCTGAAGCGCTCTGGATCTACAGCCGGTGAAAGAGCGCTTTATTACGCAGCTCTGATCTACTGGATCCTCCAGATGAACCTCAAAGCTAAAACATGCATTAAAAAGATGCTGAAAATCTCGGAGACGTCACCTGAG
Seq A exon
GGTTTGATTATGAAGGGCTGGATTGTGTTGACGTCTGACCTGGAAGAGAACAGACCTCAGGCTATACAATACTTTAACAGTGGTGTTCGGGACCCAGGAAATCTGTTTGGACTGATGGGAAAG
Seq C2 exon
ATTGAGTTCTTCATGCTGAAGCAGAATGAGTCGAGCGCTTTAGACATAATCCATCAGATCTTGCTCATTTATCCAGACTTCACCCCAGCACTCCTCATGAAGATGAAGATATTTATGGCTCTGCAGGACTACGAGCAAACAGAGGACATCGCACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000102541-'4-6,'4-5,5-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.036 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGCAGCTCTGATCTACTGGA
R:
TGCGATGTCCTCTGTTTGCTC
Band lengths:
245-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]