BtaEX0038089 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000010477 | TTC21A
Description
tetratricopeptide repeat domain 21A [Source:HGNC Symbol;Acc:HGNC:30761]
Coordinates
chr22:12483899-12490745:+
Coord C1 exon
chr22:12483899-12484065
Coord A exon
chr22:12485705-12485827
Coord C2 exon
chr22:12490588-12490745
Length
123 bp
Sequences
Splice sites
3' ss Seq
TGCCCTTGTTCTTACGCCAGGGC
3' ss Score
7.34
5' ss Seq
AAGGTAGGC
5' ss Score
10.08
Exon sequences
Seq C1 exon
ACCGAGAAGCAATTCAGGAGCTTGAGAGCAGCCTGAAGGAAGTCCGCAAGACAGCCAGTGGGACTGCCCTGTACTATGCTGGCCTCTTCCTCTGGCTTATGGGCCGCCACGACAAGGCCAAGGAGTACATTGACCGCACGTTGAAGATCTCCAGCAGCTCCAGAGAG
Seq A exon
GGCTATGTGCTCAGAGGCTGGGTGGACCTCAGCTCAGACAAACCCCACACGGTGAAGAAGTCCATCAAGTACCTGGAGCATGGCATTCAGGACACCAAAGACATCCTGGGGCTGATGGGAAAG
Seq C2 exon
GTGATGTACTTCATGATACTGCAGAACTACTCGGGGGCCCTTGAGGTGGTGAACCAGATCACCGTCACCTGCGGGAGCTTCCTGCCTGCCTTGGTCCTAAAGATGCAGCTGTTCCTGGCTCGGCAGGACTGGGAGCAGACGGTAGAAATGGGACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010477_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134241=TPR_12=PU(89.8=94.6)
A:
PF134241=TPR_12=PD(6.8=9.8)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGAGCAGCCTGAAGGAAGT
R:
CTTTAGGACCAAGGCAGGCAG
Band lengths:
247-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development