HsaALTD1035097-2/2 @ hg38
Alternative 5'ss
Gene
ENSG00000169919 | GUSB
Description
glucuronidase beta [Source:HGNC Symbol;Acc:HGNC:4696]
Coordinates
chr7:65967731-65970366:-
Coord C1 exon
chr7:65970315-65970366
Coord A exon
chr7:65970282-65970314
Coord C2 exon
chr7:65967731-65967907
Length
33 bp
Sequences
Splice sites
5' ss Seq
GGGGTGAGC
5' ss Score
5.97
3' ss Seq
CTCTGCTGCTCTGGTCCTAGGCT
3' ss Score
8.12
Exon sequences
Seq C1 exon
GATGGTGATCGCTCACACCAAATCCTTGGACCCCTCCCGGCCTGTGACCTTT
Seq A exon
GTGAGCAACTCTAACTATGCAGCAGACAAGGGG
Seq C2 exon
GCTCCGTATGTGGATGTGATCTGTTTGAACAGCTACTACTCTTGGTATCACGACTACGGGCACCTGGAGTTGATTCAGCTGCAGCTGGCCACCCAGTTTGAGAACTGGTATAAGAAGTATCAGAAGCCCATTATTCAGAGCGAGTATGGAGCAGAAACGATTGCAGGGTTTCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000169919-32-24,33-24-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0283612=Glyco_hydro_2_C=FE(10.2=100)
A:
NA
C2:
PF0283612=Glyco_hydro_2_C=FE(19.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATCGCTCACACCAAATCCT
R:
CTGAATCAACTCCAGGTGCCC
Band lengths:
125-158
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains