MmuALTD0006395-2/2 @ mm9
Alternative 5'ss
Gene
ENSMUSG00000025534 | Gusb
Description
glucuronidase, beta [Source:MGI Symbol;Acc:MGI:95872]
Coordinates
chr5:130469288-130471401:-
Coord C1 exon
chr5:130471350-130471401
Coord A exon
chr5:130471317-130471349
Coord C2 exon
chr5:130469288-130469464
Length
33 bp
Sequences
Splice sites
5' ss Seq
GGGGTGAGC
5' ss Score
5.97
3' ss Seq
CTCGACCGCTCTTGTCTTAGGCC
3' ss Score
7.68
Exon sequences
Seq C1 exon
GACGCTGATCACCCACACCAAAGCCCTGGACCTCACCCGTCCCGTGACCTTT
Seq A exon
GTGAGCAACGCCAAATATGATGCAGACCTGGGG
Seq C2 exon
GCCCCGTACGTGGATGTTATCTGTGTAAACAGCTACTTTTCTTGGTATCATGACTATGGGCATTTGGAGGTGATTCAGCCACAGCTGAATAGCCAGTTTGAGAACTGGTATAAGACGCATCAGAAGCCGATTATCCAGAGCGAGTATGGAGCAGACGCAATCCCAGGGATCCACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025534-12-9,13-9-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0283612=Glyco_hydro_2_C=FE(9.2=100)
A:
NA
C2:
PF0283612=Glyco_hydro_2_C=FE(19.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGATCACCCACACCAAAGCC
R:
TGAATCACCTCCAAATGCCCA
Band lengths:
125-158
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: