RnoALTD0013292-2/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000000913 | Gusb
Description
glucuronidase, beta [Source:RGD Symbol;Acc:2772]
Coordinates
chr12:30210417-30212377:+
Coord C1 exon
chr12:30210417-30210468
Coord A exon
chr12:30210469-30210501
Coord C2 exon
chr12:30212201-30212377
Length
33 bp
Sequences
Splice sites
5' ss Seq
GGGGTGAGC
5' ss Score
5.97
3' ss Seq
CTTGACCGCTCTTGTCCTAGGCC
3' ss Score
8.75
Exon sequences
Seq C1 exon
GACGCTGATCGCCCACACCAAAGCCCTGGACCCCACCCGTCCTGTGACCTTT
Seq A exon
GTGAGCAATACCAGATATGACGCAGACCTGGGG
Seq C2 exon
GCCCCGTACGTGGACGTGATTTGTGTGAACAGTTACTTATCCTGGTATCATGACTACGGGCATCTGGAGGTGATTCAGCTGCAGCTGACTAGCCAGTTTGAGAACTGGTATAAGATGTACCAGAAGCCAATTATCCAGAGCGAGTATGGAGCAGACGCCGTCTCGGGGCTTCATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000913-11-12,12-12-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0283612=Glyco_hydro_2_C=FE(9.2=100)
A:
NA
C2:
PF0283612=Glyco_hydro_2_C=FE(19.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGATCGCCCACACCAAAGC
R:
AATCACCTCCAGATGCCCGTA
Band lengths:
123-156
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]