HsaALTD1035916-2/2 @ hg38
Alternative 5'ss
Gene
ENSG00000171931 | FBXW10
Description
F-box and WD repeat domain containing 10 [Source:HGNC Symbol;Acc:HGNC:1211]
Coordinates
chr17:18769927-18772683:+
Coord C1 exon
chr17:18769927-18770048
Coord A exon
chr17:18770049-18770085
Coord C2 exon
chr17:18772412-18772683
Length
37 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
3' ss Seq
CCCTGTTGTTTCGGTTCCAGGAT
3' ss Score
10.35
Exon sequences
Seq C1 exon
GGAGGTGCTCGACGTGTCCCTTCTCTTCCTCCGGGTCATCAGCGCCTGTGCAGATGGCAAGATCCGAATTTACAATTTCCTCAACGGGAACTGTATGAAGGTGTTAAAAGCCAATGGCAGAG
Seq A exon
GTGATCCTGTGCTGTCCTTCTTTATTCAGGGCAACAG
Seq C2 exon
GATGGTGGTCAACACAGAGAGCAATGTTCTCATGTTCCAGTTTGAGCACATAAAGTGGCAGTATGCCGTGGAAAAAACGAAACAAAAGAAGAATAAGGAGAAAGAGGAGGAAAAAGAAGAAAATAGTCTCATGGAAATTCTCTCTAAGTGTAATATTCAGGTTCACAGCCCAAGAGAGTCTGTATCCAGTAAACAAACTGTGATCCAAGAGCTCCTACCAGGCAAACCTCCCAAGTCCCGAGTACTCCTGAAGCCGGCCAAGTTCTCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000171931-13-12,14-12-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.268
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTCTCTTCCTCCGGGTCAT
R:
TTGCTCTCTGTGTTGACCACC
Band lengths:
128-165
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains