HsaEX1014386 @ hg38
Exon Skipping
Gene
ENSG00000171931 | FBXW10
Description
F-box and WD repeat domain containing 10 [Source:HGNC Symbol;Acc:HGNC:1211]
Coordinates
chr17:18768534-18772683:+
Coord C1 exon
chr17:18768534-18768676
Coord A exon
chr17:18769927-18770085
Coord C2 exon
chr17:18772412-18772683
Length
159 bp
Sequences
Splice sites
3' ss Seq
GCTACTCTGTTCCCTTCCAGGGA
3' ss Score
9.77
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
ACTCTCAGTGGCCATGAGGGAGCCGTGAAATGCCTGTTCTTTGACCAGTGGCATCTCCTCTCAGGAAGTACTGATGGCCTGGTCATGGCCTGGAGCATGGTGGGGAAGTACGAGCGCTGCCTGATGGCCTTCAAGCATCCCAA
Seq A exon
GGAGGTGCTCGACGTGTCCCTTCTCTTCCTCCGGGTCATCAGCGCCTGTGCAGATGGCAAGATCCGAATTTACAATTTCCTCAACGGGAACTGTATGAAGGTGTTAAAAGCCAATGGCAGAGGTGATCCTGTGCTGTCCTTCTTTATTCAGGGCAACAG
Seq C2 exon
GATGGTGGTCAACACAGAGAGCAATGTTCTCATGTTCCAGTTTGAGCACATAAAGTGGCAGTATGCCGTGGAAAAAACGAAACAAAAGAAGAATAAGGAGAAAGAGGAGGAAAAAGAAGAAAATAGTCTCATGGAAATTCTCTCTAAGTGTAATATTCAGGTTCACAGCCCAAGAGAGTCTGTATCCAGTAAACAAACTGTGATCCAAGAGCTCCTACCAGGCAAACCTCCCAAGTCCCGAGTACTCCTGAAGCCGGCCAAGTTCTCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000171931_CASSETTE2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.268
Domain overlap (PFAM):
C1:
PF0040027=WD40=PD(83.8=64.6)
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGGCCTTCAAGCATCCCAA
R:
GCCTGGTAGGAGCTCTTGGAT
Band lengths:
244-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains