GgaEX1000234 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NMG9]
Coordinates
chr18:2215927-2218045:+
Coord C1 exon
chr18:2215927-2216069
Coord A exon
chr18:2216795-2216950
Coord C2 exon
chr18:2217846-2218045
Length
156 bp
Sequences
Splice sites
3' ss Seq
ACTGCATGTTGTGTTTTCAGGGA
3' ss Score
9.53
5' ss Seq
CAGGTTGGT
5' ss Score
8.08
Exon sequences
Seq C1 exon
GTACTAGAAGGGCACCTAGGCCCAGTGAGGTGCTTGTCCTTTGATCAGTGGCACCTCGTCTCAGGAAGCAGTGATGGATATGCCTTTGGATGGAGCATGGTGGGAGACCTTAAGAGGTGCCTAACAGCTTTCCGTCACCCGAA
Seq A exon
GGAAGTTCTGTCTCTGGAGTTGCTCTTTCTCAGAGTCGTCAGCGGCTGTGCTGATGGGAAGATCCGTGTGTTCAACTACCTGACTGGGAGCTGCCTGAGAGTGCTGGTGGGCAGCAGCAGGGGGGACCCCATATCTTTCTGTGCTGCCAAAAACAG
Seq C2 exon
GATGGTGATCAATGCACCCAGCAGCCTGCTGATGTTCCAGTTTGAGGATGTCATGTGGGACTACATGCTAGGTGCTGAGCGAGATATGGTGTGGAAGGAGAAGCAGGAGAGCTGCCCTTTGGGCACAGCACTGACTCCCTCCCAGCAAACCAAGAGCCACATTGCCAGCCAGATGCGACGCCTCACTCTGAAGACACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001323-'8-9,'8-8,9-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.265
Domain overlap (PFAM):
C1:
PF0040027=WD40=PD(83.8=64.6)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTCTCAGGAAGCAGTGATGG
R:
TGGCAATGTGGCTCTTGGTTT
Band lengths:
254-410
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]