BtaEX6087359 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MLX8]
Coordinates
chr19:33602199-33608271:-
Coord C1 exon
chr19:33608129-33608271
Coord A exon
chr19:33603297-33603418
Coord C2 exon
chr19:33602199-33602275
Length
122 bp
Sequences
Splice sites
3' ss Seq
GTCGCTCTGTTCCCTTCCAGGGA
3' ss Score
10.83
5' ss Seq
GAGGTGATC
5' ss Score
3.49
Exon sequences
Seq C1 exon
ACGCTCAACGGCCACGAGGGGGCCGTGAAGTGTCTATACTTCGACCAGTGGCATCTCCTGTCAGGAAGCACTGATGGCCTGGTCATGGCCTGGAGCATGGTGGGAAAGTACGAGCGGTGCCTCATGGCCTTCAAACATCCAAA
Seq A exon
GGAGGTTCTCCACGTGGCCCTTCTCTTCCTCCGGGTCATCAGTGCTTGTGCCGATGGCAAGATCCGCATTTACAATTTCCTCAACGGGAACTGTCTGAAGGTGATGAAAGCCAATGGCAGAG
Seq C2 exon
CTATAGGCGACCTAGGAACCAGGGTTGGGGAGCAGCGCCCTGTGAATGCTGTGAACCCCAGGAACAATGGGTGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002605-'24-22,'24-21,25-22=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0040027=WD40=PD(83.8=66.0)
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCAACGGCCACGAGGGG
R:
CCATTGTTCCTGGGGTTCACA
Band lengths:
210-332
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]