GgaEX1000234 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr18:2199066-2201184:+
Coord C1 exon
chr18:2199066-2199208
Coord A exon
chr18:2199934-2200089
Coord C2 exon
chr18:2200985-2201184
Length
156 bp
Sequences
Splice sites
3' ss Seq
ACTGCATGTTGTGTTTTCAGGGA
3' ss Score
9.53
5' ss Seq
CAGGTTGGT
5' ss Score
8.08
Exon sequences
Seq C1 exon
GTACTAGAAGGGCACCTAGGCCCAGTGAGGTGCTTGTCCTTTGATCAGTGGCACCTCGTCTCAGGAAGCAGTGATGGATATGCCTTTGGATGGAGCATGGTGGGAGACCTTAAGAGGTGCCTAACAGCTTTCCGTCACCCGAA
Seq A exon
GGAAGTTCTGTCTCTGGAGTTGCTCTTTCTCAGAGTCGTCAGCGGCTGTGCTGATGGGAAGATCCGTGTGTTCAACTACCTGACTGGGAGCTGCCTGAGAGTGCTGGTGGGCAGCAGCAGGGGGGACCCCATATCTTTCTGTGCTGCCAAAAACAG
Seq C2 exon
GATGGTGATCAATGCACCCAGCAGCCTGCTGATGTTCCAGTTTGAGGATGTCATGTGGGACTACATGCTAGGTGCTGAGCGAGATATGGTGTGGAAGGAGAAGCAGGAGAGCTGCCCTTTGGGCACAGCACTGACTCCCTCCCAGCAAACCAAGAGCCACATTGCCAGCCAGATGCGACGCCTCACTCTGAAGACACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001323-'7-8,'7-7,8-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.265
Domain overlap (PFAM):
C1:
PF0040027=WD40=PD(83.8=64.6)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTCTCAGGAAGCAGTGATGG
R:
TGGCAATGTGGCTCTTGGTTT
Band lengths:
254-410
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]