DreEX6070443 @ danRer10
Exon Skipping
Gene
ENSDARG00000086484 | fbxw10
Description
F-box and WD repeat domain containing 10 [Source:ZFIN;Acc:ZDB-GENE-101021-1]
Coordinates
chr12:35855852-35856603:+
Coord C1 exon
chr12:35855852-35855994
Coord A exon
chr12:35856082-35856240
Coord C2 exon
chr12:35856380-35856603
Length
159 bp
Sequences
Splice sites
3' ss Seq
GCCTCTATTATGATTCTTAGAGA
3' ss Score
4.37
5' ss Seq
CACGTGAGT
5' ss Score
9.3
Exon sequences
Seq C1 exon
CAAATCAGTGGCCACCAGGGGGCAGTGTTGTGTTTGTGCTTCGATCAGTGGCATATCCTGTCTGGAGGTTCAGATGGTGTCGTCAAGGCCTGGAGCATTAATAGTAGCTTTAAGAAGTGCCTGCGGACCTTCCAGCATCCAAA
Seq A exon
AGAGGTGTTGGCAATGTCTTTTCTGTTCCTGCGAATCATTACCGGTTGCATGGATGGAAAGATCCGGATCTTCAACTTTCTTAATGGAGATTGCCTGAGAGTTATCAAGACAAACATGAAGCAATGCCCCGTGCTTTCTCTGCACACGCACCACAACAC
Seq C2 exon
TGTGGTTGTAAACACCAGAGGCAGTGTTCTGATGCTTCAGTTTGCTGAGGTTCAGTGGGACTACTCTGCCAGAGCTGTGAGGGATTTAACTGAGCAGTTCCACGTCTCCCCTAAGAATGTGCCAAGGAGCACTGAGCGGGCGACTCAAGGGGGCTCATCCGGCCTAAAAAGTCATCCACATCATTCTAAAAACCTCTCAACTACAAATATGCAGCATGCACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000086484-'8-10,'8-9,9-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.553
Domain overlap (PFAM):
C1:
PF0040027=WD40=PD(86.1=64.6),PF0040027=WD40=PU(27.8=20.8)
A:
PF0040027=WD40=PD(69.4=46.3)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGGTTCAGATGGTGTCGT
R:
ACTTTTTAGGCCGGATGAGCC
Band lengths:
253-412
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]