MmuEX1010282 @ mm10
Exon Skipping
Gene
ENSMUSG00000090173 | Fbxw10
Description
F-box and WD-40 domain protein 10 [Source:MGI Symbol;Acc:MGI:3052463]
Coordinates
chr11:62869012-62875189:+
Coord C1 exon
chr11:62869012-62869154
Coord A exon
chr11:62873371-62873529
Coord C2 exon
chr11:62874942-62875189
Length
159 bp
Sequences
Splice sites
3' ss Seq
GGTGTTGTCTTCCCTTCTAGGGA
3' ss Score
10.62
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
ACTCTCACTGGGCACGAGGGAGCTGTGAAGTGCCTGTTCTTTAACGAATGGCATCTCGTCTCTGGAGGTGCTGACGGCCTGGTCATGGCCTGGAGCATGGTGGGAAAGTACGAACGGTGCCTGATGGCCTTCAAGCATCCTAA
Seq A exon
GGAGGTGCTGCAGGTGTCTCTCCTCTACCTCCGGGTCATCAGTGCCTGTGGAGACGGCAAGATCCGAATTTATAATTTCCTCAATGGGAACTGTCTGAAGGTGATAAAAGTCGACGCCAGAGGTGACCCCGTGCTATCCTTCTTTTATCAGGGCAACAG
Seq C2 exon
GATGGTGGCCCACACGGACAGCAACATTCTCGTGTTCCAGTTTGAAAATGTCAAGTGGCAGTACAGCTCAGACAAGAACAAAGTAAAGAAGAGCAAGGACAAAGAGGAGGAGAGGGAAGAGACCAGCCTCGGGGATGAGCATTCCAGGTCTACCATTCAGGGGCACAGCCTGAAGGACTCTGTGTCTAGTAAACAGGAGTTCTCAAAGTCCCGGGTTCACCTGAAACAAACCAAGAACCTATCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000090173_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.464
Domain overlap (PFAM):
C1:
PF0040027=WD40=PD(83.8=64.6)
A:
NO
C2:
NO
Main Skipping Isoform:
ENSMUST00000036085fB10004
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGATGGCCTTCAAGCATCC
R:
TTTGTTTCAGGTGAACCCGGG
Band lengths:
254-413
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types