HsaALTD1035946-1/2 @ hg38
Alternative 5'ss
Gene
ENSG00000172006 | ZNF554
Description
zinc finger protein 554 [Source:HGNC Symbol;Acc:HGNC:26629]
Coordinates
chr19:2827617-2832494:+
Coord C1 exon
chr19:2827617-2827743
Coord A exon
NA
Coord C2 exon
chr19:2832303-2832494
Length
0 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
3' ss Seq
TATACTCTTGTCTTTTTCAGAAG
3' ss Score
10.61
Exon sequences
Seq C1 exon
GAATTAGTAACCTTTGAGGACGTGTCCATGGACTTCTCCCAGGAGGAGTGGGAGTTGCTGGAGCCTGCTCAGAAGAACCTGTACAGAGAGGTGATGCTGGAGAACTACAGGAACGTGGTCTCCCTGG
Seq A exon
NA
Seq C2 exon
AAGCCTTGAAGAACCAATGTACTGATGTGGGGATTAAAGAGGGTCCACTTTCCCCAGCACAAACCTCACAAGTCACTAGTCTTTCCTCATGGACGGGGTATTTACTTTTTCAACCAGTGGCTTCTTCCCACTTGGAGCAAAGAGAAGCCCTGTGGATAGAGGAAAAAGGAACTCCTCAAGCCTCCTGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000172006-13-29,14-29-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.082
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACAGGAACGTGGTCTCCCT
R:
ACTTGTGAGGTTTGTGCTGGG
Band lengths:
96-101
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains