HsaINT0187624 @ hg38
Intron Retention
Gene
ENSG00000172006 | ZNF554
Description
zinc finger protein 554 [Source:HGNC Symbol;Acc:HGNC:26629]
Coordinates
chr19:2827617-2832494:+
Coord C1 exon
chr19:2827617-2827743
Coord A exon
chr19:2827744-2832302
Coord C2 exon
chr19:2832303-2832494
Length
4559 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
3' ss Seq
TATACTCTTGTCTTTTTCAGAAG
3' ss Score
10.61
Exon sequences
Seq C1 exon
GAATTAGTAACCTTTGAGGACGTGTCCATGGACTTCTCCCAGGAGGAGTGGGAGTTGCTGGAGCCTGCTCAGAAGAACCTGTACAGAGAGGTGATGCTGGAGAACTACAGGAACGTGGTCTCCCTGG
Seq A exon
GTAAGGCAAGCATCACTAATTCCTGTGTTCATTGATTCACATTTATCTGGTGTATTAGTCTGTTCTCACACTGCTAATAAAGAAATACCCAAGACTGGGTAATTTGTAAAGGAAAGGGGGTTTAATGGACTCAGTTCCACATGGCCGGGGAGGGCTCACAATCATGGTGGAAGGCGAATGAGGAACAAAGTCACATCTTACGTGGCGGTAGGCAAGAGAGCTTGTGCAGGGGAACTCCCATTTGTAAAACCGTCAGATCTCGTGAGACTTATTCATTACCACGAGAACAGTATGGGGAAAACCACCTCCGCCATGATTCAGTTATCTCCCCCTGGCTCCACCCTTGACGTCGGGATTATTACAATTCAAGGTGAGATTTGGATGGCAACACAGCCAAACCATGTCATCTAGCATCTACTATGTGTCTGGCACCATGCTGGGAATGGGGGATTCATTGGTAAGTAAGACAGACATGGGTCCTGGTTTTGTGGCTTTCGTGGTCTGGTTTCTCTGAGAACAGATGACCTTACTTGTTCAGTACGTGATAGCTGGAGCTGCAGTGCAATTGCATGTCTCAGCTCAGGCATAGATAACTTCTCTGATTCCCCTTGGGAACAAAGTCAGAGTGTCTTAGTCCGTTTCACACTGCTATAAAGAGTACCACCTAGGCTGGGTGTGGTGGCTCATGCCTGTTATCCAAGCACTTAGGGATCACAAGGGTGATCACCTGAGGTCAGGAGTTCAAGACCAGCCTGGCCACTGTGGTGAAACCCTGTCTCTACTAAAAATGGCGGGCACCTGTAATCCCAGCTACTCAGGAGGCTGAGGCAGGAGACTTGCTTGAACACGGGAGGCAGAGGTTGCAGGGTTGCAGTGAGCCAAGATTGCACCACTGCACTCCAGCCTGGGTGACAGAGCAAGACTCCGTCTCAAGAAAAAAAAAAAAAAAGCAAGAAAAGAGGTTTAATGGAGTCACAGTTCCACATGGCTCGGGAGGCCTCAGGACACTTACAATCACGGCAGAAGGGGAAGCAGGCACCTTCTTCAAAAGGCAGCAAGAGAGGGAAGAGAGCAGGGGAAACCTTATAAAACCATCAGATCTCATGAGAACTCACTATCACGAGAACAGCATGGGGGAACTGCCCCCATGATCTCATCACCTCCCATCAGGTACCTCCCTTGACACGTGGGGATTACGATTGGAGATTACAATTCGAGGTGAGATTTGGGTCGGGAGACAGCTCAACCATATCACAGAGCATTTGTACTCTTTCTGCCAAGGTAAAGAGCCATCATTAAAAAAAAAAATGTTTTTACTGTGATAAAAAATGTAGGCTGGGCGTGGTGGTTCATGTCTGTAATCCCAGCACTTCAGGAGGCCAAGGTGGGTGGATCACTTGAGGCCAGGAGTTTGAGACCAGCCTGACCAATGTGGCAAAACCCCATCTCTACTAAAAATACAAAAATTAGCTGGGCATGGTGATAGACGTCTGTAATCCCAGCTACTTGGGAGGTCGAGGCATGAGAATCGCTTGAACCTGAGAGGCAGAGGTTGCAGTGAGCCAAGATCGTACCACTGGACTCCAGCCTGGGCGACAGAGCGAGACTCTGTCTCAAAAAATATATATACAGCAGTGGCTCACGCCTGTAATCCCAGCACTCTGGGAGGCCAAGGCGGGGTAGATCACCTGAGAGACCAGCTTGACCAACATGGAGAAACCTTGTCTCTACTAAAAATACAAAATTAGCCAGGCGTGGTGGCGCATGCCTGTAATCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATCGCTTGAACCCAGGAGGTGGAGGTTGCGGTAAGCTGAGATCGTGCCACTGGACTCCAGCCTGGGCAACAAGAGCAAAACTCCCTGTCAAAAAAATAAAAAAAGTATATATACATATATATATGCACACACGTATCTATCTATATATCTCTATATAAACATAAAATGTGCCTTTTTCACCCCTTTTAAGTGTGCAGTTCAGTGGCACTAAATGCATTCAGCATGTACTACAGCCACCACAACTGTCCATTTCCAGAACTTTTATCCTCAACCAAAACTCTGTACCCGTTAAATTCTCCCTCCCCAGCCCCTCCTTCAGCCCCTTGTAACCATGAGTCACTCTCCATCTCTATGGATTTGCCTACCCTGGACATTTCTTTTCTTTTCTTTTTTTGAGACGGAGTCTCGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCGTGATCTTGGCTCACTGCAAGCTCCGCCTCCTGGGTTCACGCCATTCTCCTGCCTCAGCCTCCGGAGTAGCTGGGACTACAGGCGCCCGCCACCATGCCCGGCTAATTTTTTAATAATTTTTTGTATTTTTAGTAGAGATGGGATTTCACTGTGTTAGCCAGGATGGTCTCAATCTCCTGACCTTGTGATCTGCCCACCTCGGCCTCCCAGAGTGCTGGGATTACAGGCAGGAGTCACCGTGCCCGGCAGACATTTCATATAAATGGAATCATATAATATGTGGCCTTTTGTGTCTGGCTGATTTCACTGGGTGTGATGTTTTCAGTGTTCATTTACATTGTAGCCTGTGTCAGTGCTTTGTTCATAGATGAAGAAGATTCCATCGTGTGTATACAACACGCTGTGTCCATCCATTCACCAGTTGATGGACGCCTGGGTTTCCACCTTTCCGCTGTTGTGAATCCTGTTGCTGTCAGCATTGGCAAACAAGTATCTGTTTCAGTCACTGTTTTCAGTGCTTTGGGTCAATACTAGGAGTAGAATTGCTGGATCATGCGGTAATTCTATGTTTAGAATTTAGCTTTTTCAGGAACTGCCATACTGGCTTTTCTTTTGTTTTTTTGTTTTGAGACAGAGTCTCACTTTGTTGCCCAGGCTGGAGTGCAGTGGCACTCTCTCAGGTCACTGCAACCTCTGCCTCCGCAGTTCAAGTGATTCTCATGCCTCAGCCTCCCAAGTAGCTGGAATTACAAGTGTGCACCACCACACCTGTTTTTGTATTTTTTTTTTTTTATGAGACGGAGTTTCGCTCTCGTTGCCCAGGCTGAAGTGCAGTGGTACAATCTAGGCTCACCACAACCTCCACCTCCCAGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCCAGTAGCTGGGATTACAGGCATGCGCCACCACACCCGGCTACTGTTTTTGTATTTTTAATAGAGATGGATTTTTGCCATGTTGGCCAGGGTGGTGTTGAACTCATGACCTCTAGTGATCCACCTACTTCCGCTTCCCAAAGTGCTGGGATTACAGACGTGAGCCACTGTGCCCAGCCCCATACTGGGTTTTGTATCAGCATGTATATTTTCCATTCCCACCAGCAGTGCAGACTGTTGCAATTTCTCCACATCCTTGGCAACACTTACTATTTTTTATTATGGCCTTTCTAATATGTGTGAAGTGGTATCTCATTGCGGTTTTGATATGCATTCCCCTAATGACCAATGACATCGAGCATCCATTCCTGTGTTTATTGACCATTTGTGTATCGATTTTTGGGGGAAATGTAAGATCTGTAATTTTTTTTTTTTTTTTACTCTGTCGCCCATGCTGGAATGCAGTGCTGCAATCTCGGCTCACTGCAAGCCCTGCCTCCCGAGTTCATGTCATTCTCCCGCCTCAGCCTCCCAAGTAGCTGGGACTACAGGCGCCTGCCACCACACCCGGCTAATTTTTTGTATTTTTAGTAGAGACGGGGTTTCACCGTGTTAGCCAGGATGGTCTTGATCTCCTGACCTCATGATCCACCCGCCCTGCCCTCCCAAAGTGATGGGATTACAGGTGTGAGCCACTGCACCCGCCCTTTTTTTTTTTTTTTTTTTTTGAGACAGAGTCTCACTCTCATTGCCCAGCCTGGGGTGCAGTGGTGTGATCACAGCTCACTGCAGCCTTGACCTCCCCAGGGCTCAAGTGATCTTCCCACCTCAATCTCCCAGGTAGCTGGGACTATAGGCTTAGACCACCACACCTGGCTAGTTTTTTTGTTTGTTTGTTTTTGGTTTTTTTTTGGTAGGTCCGGGGTCTTGTCATGTTGCTCAGGCTGGTCTCAAACTCCTGTGTTCCAGTGATCACCTGCCTCTGGGCCTCCCAAAGTGTTGGGATTACAGGTGTGAGCCACCACGCCCAACCAGATCTGTAATTTTTTTTTTCTTTGAGACTGAGTCTTGCTCTGTTGCCCAGGCTGGAGTGCAATGCCACGACCTCGGCTCACTGCAACCTCTGCCTCCTGGGTTCAAGTGATTCTCCCACCTCAGCCTCCTGAGTAACTGGGGTTACAGGCATGCACCACCACGCCCAGCTAATTTTTGTATTTTTAGTAGAGATGGGGTTTTACCATGTTGGCCAGGCTGGTCTCAAACTCCTGACCTCAGGTGATCCGCCTGCCTCGGCCTCCCAAATTGCTGGGATTACAGGAGTGAGCCACCATGCCTGGCACAGATCTGTAATTTTTTAACTAGAAAATAAAATCATTATCTTGTGCTACCTCTCAAGTATACTCTTGTCTTTTTCAG
Seq C2 exon
AAGCCTTGAAGAACCAATGTACTGATGTGGGGATTAAAGAGGGTCCACTTTCCCCAGCACAAACCTCACAAGTCACTAGTCTTTCCTCATGGACGGGGTATTTACTTTTTCAACCAGTGGCTTCTTCCCACTTGGAGCAAAGAGAAGCCCTGTGGATAGAGGAAAAAGGAACTCCTCAAGCCTCCTGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000172006:ENST00000317243:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.082
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains