HsaALTD1037224-1/2 @ hg38
Alternative 5'ss
Gene
ENSG00000175322 | ZNF519
Description
zinc finger protein 519 [Source:HGNC Symbol;Acc:HGNC:30574]
Coordinates
chr18:14057457-14077526:-
Coord C1 exon
chr18:14077334-14077526
Coord A exon
NA
Coord C2 exon
chr18:14057457-14057515
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTACAG
5' ss Score
6.62
3' ss Seq
TATATTCTTTATATTTGAAGGAG
3' ss Score
5.02
Exon sequences
Seq C1 exon
GTGAAATGATTATTGCAGTTTCGAGGGGAGATGATGTCACAAGATCTCGAACCCATATCTCAGAACCGCCTGCCTCCTCCCACACACTCTGGCTGTCCTGACCATCACTTCAAGCCCACCAGCCCTGCAGCAAAAAAAATCAAACGAGTAGTTCAGAAGGCAAAGTCTGCAAGGGAAGGAAGTATATTGGGAG
Seq A exon
NA
Seq C2 exon
GAGTTTACCGTGAAGAAGCTGACTGCTATGAACAGCATGTGAAGGTGGAGGAATTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000175322-29-25,30-25-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCAGCCCTGCAGCAAAAA
R:
GCAGTCAGCTTCTTCACGGTA
Band lengths:
103-108
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains