HsaEX1045186 @ hg38
Exon Skipping
Gene
ENSG00000175322 | ZNF519
Description
zinc finger protein 519 [Source:HGNC Symbol;Acc:HGNC:30574]
Coordinates
chr18:14057457-14085076:-
Coord C1 exon
chr18:14084877-14085076
Coord A exon
chr18:14078200-14078298
Coord C2 exon
chr18:14057457-14057515
Length
99 bp
Sequences
Splice sites
3' ss Seq
CTATTAATTTTTTGTATCAGTAC
3' ss Score
6.7
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
TGGAAAAGCGAGATTGTCTTTGACCATTTGCTATGGACATTGTCAGGGATGGTGCAGCCTGAATGAGAATGTCTGCGGTATTTCCCGAAATAAGTATCCCTCAAGGATGATACTGTGGACCTCACTCAGGAAGAATGTGTCCTTCAGGGAAAGCTGCACAGAGACGTGATGCTGGAGAAGCAGTCATCTGGTTACTTTAG
Seq A exon
TACATGACTTCAGGCTCCTATGTGCAGAAGTCCTCAACCCCCAGGCTGCAGACCAGTACCTGTCCATGGCCTGTTAGGAAACTGGCCGCACAGCAGGAG
Seq C2 exon
GAGTTTACCGTGAAGAAGCTGACTGCTATGAACAGCATGTGAAGGTGGAGGAATTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000175322_MULTIEX1-10/12=7-12
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATGGTGCAGCCTGAATGAG
R:
GCAGTCAGCTTCTTCACGGTA
Band lengths:
180-279
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains