HsaEX1045192 @ hg38
Exon Skipping
Gene
ENSG00000175322 | ZNF519
Description
zinc finger protein 519 [Source:HGNC Symbol;Acc:HGNC:30574]
Coordinates
chr18:14057457-14132430:-
Coord C1 exon
chr18:14132275-14132430
Coord A exon
chr18:14084877-14085076
Coord C2 exon
chr18:14057457-14057515
Length
200 bp
Sequences
Splice sites
3' ss Seq
TTCTTTTTTTTATCCCCCAGTGG
3' ss Score
10.07
5' ss Seq
TAGGTGAGT
5' ss Score
8.83
Exon sequences
Seq C1 exon
CACTTCAGCCAGAGCGCGGGGTTAGGGCTTCATTGCCTTGTGTCCTCTGCTCCGGGAGACTTCGGTGATTCTGCCACTCACTCCGTCGCTCTGTGACCTGCTGGCATTGAATGATTTATAGCTAAGACTCCAGGACACCCCTGAAGCCGAGAAATG
Seq A exon
TGGAAAAGCGAGATTGTCTTTGACCATTTGCTATGGACATTGTCAGGGATGGTGCAGCCTGAATGAGAATGTCTGCGGTATTTCCCGAAATAAGTATCCCTCAAGGATGATACTGTGGACCTCACTCAGGAAGAATGTGTCCTTCAGGGAAAGCTGCACAGAGACGTGATGCTGGAGAAGCAGTCATCTGGTTACTTTAG
Seq C2 exon
GAGTTTACCGTGAAGAAGCTGACTGCTATGAACAGCATGTGAAGGTGGAGGAATTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000175322_MULTIEX1-7/12=C1-12
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTTCAGCCAGAGCGCG
R:
GAATTCCTCCACCTTCACATGCT
Band lengths:
212-412
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains