HsaALTD1037233-2/3 @ hg38
Alternative 5'ss
Gene
ENSG00000175356 | SCUBE2
Description
signal peptide, CUB domain and EGF like domain containing 2 [Source:HGNC Symbol;Acc:HGNC:30425]
Coordinates
chr11:9025702-9027525:-
Coord C1 exon
chr11:9027380-9027525
Coord A exon
chr11:9027364-9027379
Coord C2 exon
chr11:9025702-9025854
Length
16 bp
Sequences
Splice sites
5' ss Seq
CCTGTGCGT
5' ss Score
4.27
3' ss Seq
TCTCCAACTTCCCTTGGCAGCTT
3' ss Score
8.35
Exon sequences
Seq C1 exon
GGTACATTGAATCCCCAAACTACCCAGGCAATTACCCAGCCAACACCGAGTGTACGTGGACCATCAACCCACCCCCCAAGCGCCGCATCCTGATCGTGGTCCCTGAGATCTTCCTGCCCATAGAGGACGACTGTGGGGACTATCTG
Seq A exon
GTGATGCGGAAAACCT
Seq C2 exon
CTTCATCCAATTCTGTGACAACATATGAAACCTGCCAGACCTACGAACGCCCCATCGCCTTCACCTCCAGGTCAAAGAAGCTGTGGATTCAGTTCAAGTCCAATGAAGGGAACAGCGCTAGAGGGTTCCAGGTCCCATACGTGACATATGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000175356-51-66,52-66,53-66-2/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=NA C2=0.012
Domain overlap (PFAM):
C1:
PF0043115=CUB=PU(57.3=94.0)
A:
NA
C2:
PF0043115=CUB=PD(41.8=88.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGATCGTGGTCCCTGAGAT
R:
TCGTAGGTCTGGCAGGTTTCA
Band lengths:
104-120
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains