MmuALTD1002667-2/3 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000007279 | Scube2
Description
signal peptide, CUB domain, EGF-like 2 [Source:MGI Symbol;Acc:MGI:1928765]
Coordinates
chr7:109804608-109806240:-
Coord C1 exon
chr7:109806070-109806240
Coord A exon
chr7:109806043-109806069
Coord C2 exon
chr7:109804608-109804760
Length
27 bp
Sequences
Splice sites
5' ss Seq
CCTGTGCGT
5' ss Score
4.27
3' ss Seq
ACTCTATTTTTTCTTGGCAGCTT
3' ss Score
8.84
Exon sequences
Seq C1 exon
ACAGAAAGTGTGGAGGGGAGCTGGGGGATTTCACAGGGTATATTGAATCCCCAAACTACCCTGGGAACTACCCAGCCAACTCAGAGTGCACCTGGACCATCAACCCACCCCCCAAACGCCGGATCCTGATTGTGGTCCCTGAGATCTTCCTGCCCATAGAGGATGACTGCG
Seq A exon
GTGACTACCTGGTGATGCGGAAAACCT
Seq C2 exon
CTTCATCAAATTCTGTGACCACATATGAAACCTGCCAGACTTATGAACGCCCCATCGCCTTCACCTCCAGGTCAAAGAAACTGTGGATTCAGTTCAAGTCCAATGAAGGGAACAGTGCCCGGGGGTTCCAGGTTCCCTATGTGACATACGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000007279-29-29,30-29,31-29-2/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PU(57.3=94.0)
A:
NA
C2:
PF0043115=CUB=PD(41.8=88.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAACGCCGGATCCTGATTGTG
R:
GCGATGGGGCGTTCATAAGTC
Band lengths:
116-143
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types