MmuALTD1002667-3/3 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000007279 | Scube2
Description
signal peptide, CUB domain, EGF-like 2 [Source:MGI Symbol;Acc:MGI:1928765]
Coordinates
chr7:109804608-109806240:-
Coord C1 exon
chr7:109806070-109806240
Coord A exon
chr7:109805968-109806069
Coord C2 exon
chr7:109804608-109804760
Length
102 bp
Sequences
Splice sites
5' ss Seq
AATGTGAGG
5' ss Score
4.51
3' ss Seq
ACTCTATTTTTTCTTGGCAGCTT
3' ss Score
8.84
Exon sequences
Seq C1 exon
ACAGAAAGTGTGGAGGGGAGCTGGGGGATTTCACAGGGTATATTGAATCCCCAAACTACCCTGGGAACTACCCAGCCAACTCAGAGTGCACCTGGACCATCAACCCACCCCCCAAACGCCGGATCCTGATTGTGGTCCCTGAGATCTTCCTGCCCATAGAGGATGACTGCG
Seq A exon
GTGACTACCTGGTGATGCGGAAAACCTGTGCGTCTCTCCCTGGGCTTCCCTCCCTTCCCAAGGCAGCCTGGGAAACCTGATGACCTGCCCCCAGCTTTAAAT
Seq C2 exon
CTTCATCAAATTCTGTGACCACATATGAAACCTGCCAGACTTATGAACGCCCCATCGCCTTCACCTCCAGGTCAAAGAAACTGTGGATTCAGTTCAAGTCCAATGAAGGGAACAGTGCCCGGGGGTTCCAGGTTCCCTATGTGACATACGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000007279-29-29,30-29,31-29-3/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PU(57.3=94.0)
A:
NA
C2:
PF0043115=CUB=PD(41.8=88.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAATCCCCAAACTACCCTGG
R:
GGCACTGTTCCCTTCATTGGA
Band lengths:
247-349
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types