HsaALTD1039742-2/2 @ hg38
Alternative 5'ss
Gene
ENSG00000184647 | PRSS55
Description
protease, serine 55 [Source:HGNC Symbol;Acc:HGNC:30824]
Coordinates
chr8:10529507-10531545:+
Coord C1 exon
chr8:10529507-10529598
Coord A exon
chr8:10529599-10529699
Coord C2 exon
chr8:10531295-10531545
Length
101 bp
Sequences
Splice sites
5' ss Seq
GTTGTAAGT
5' ss Score
8.3
3' ss Seq
CTCTGGTTCTCTGCCACCAGTCC
3' ss Score
7.06
Exon sequences
Seq C1 exon
AATGTGGTGACAGATCTATTTTCGAGGGAAGAACTCGGTATTCCAGAATCACAGGGGGGATGGAGGCGGAGGTGGGTGAGTTTCCGTGGCAG
Seq A exon
GTGAGTATTCAGGCAAGAAGTGAACCTTTCTGTGGCGGCTCCATCCTCAACAAGTGGTGGATTCTCACTGCGGCTCACTGCTTATATTCCGAGGAGCTGTT
Seq C2 exon
TCCAGAAGAACTGAGTGTCGTGCTGGGGACCAACGACTTAACTAGCCCATCCATGGAAATAAAGGAGGTCGCCAGCATCATTCTTCACAAAGACTTTAAGAGAGCCAACATGGACAATGACATTGCCTTGCTGCTGCTGGCTTCGCCCATCAAGCTCGATGACCTGAAGGTGCCCATCTGCCTCCCCACGCAGCCCGGCCCTGCCACATGGCGCGAATGCTGGGTGGCAGGTTGGGGCCAGACCAATGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000184647-1-2,2-2-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.045 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(21.1=73.8)
A:
NA
C2:
PF0008921=Trypsin=PD(63.4=97.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGTGGGTGAGTTTCCGTG
R:
CAACCTGCCACCCAGCATTC
Band lengths:
258-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains