MmuALTD1021812-3/3 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000034623 | Prss55
Description
protease, serine 55 [Source:MGI Symbol;Acc:MGI:1918287]
Coordinates
chr14:64079196-64081851:-
Coord C1 exon
chr14:64081777-64081851
Coord A exon
chr14:64081659-64081776
Coord C2 exon
chr14:64079196-64079443
Length
118 bp
Sequences
Splice sites
5' ss Seq
TTCGTAAGT
5' ss Score
9.77
3' ss Seq
ATCTGCTTCTGTGCCACCAGCCC
3' ss Score
6.14
Exon sequences
Seq C1 exon
AGTGTGGTGTGAGACCCCTGTATGATAGCAGAATTCAATACTCCAGGATCATAGAAGGGCAGGAGGCTGAGCTGG
Seq A exon
GTGAGTTTCCATGGCAGGTGAGCATTCAGGAAAGTGACCACCATTTCTGCGGCGGCTCCATTCTCAGTGAGTGGTGGATCCTCACCGTGGCCCACTGCTTCTATGCTCAGGAGCTTTC
Seq C2 exon
CCCAACAGATCTCAGAGTCAGAGTGGGAACCAATGACTTAACTACTTCACCCGTGGAACTAGAGGTCACCACCATAATCCGGCACAAAGGCTTTAAACGGCTGAACATGGACAACGACATTGCCTTGTTGCTGCTAGCCAAGCCCTTGACGTTCAATGAGCTGACGGTGCCCATCTGCCTTCCTCTCTGGCCCGCCCCTCCCAGCTGGCACGAATGCTGGGTGGCAGGATGGGGCGTAACCAACTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034623-9-7,10-7,11-7-3/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(21.1=73.8)
A:
NA
C2:
PF0008921=Trypsin=FE(36.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTGGTGTGAGACCCCTGTA
R:
ACCGTCAGCTCATTGAACGTC
Band lengths:
242-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types