HsaALTD1044463-1/2 @ hg38
Alternative 5'ss
Gene
ENSG00000214711 | CAPN14
Description
calpain 14 [Source:HGNC Symbol;Acc:HGNC:16664]
Coordinates
chr2:31194409-31197334:-
Coord C1 exon
chr2:31197249-31197334
Coord A exon
NA
Coord C2 exon
chr2:31194409-31194483
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAAC
5' ss Score
5.56
3' ss Seq
ATTCCCTTTTCTATTTTCAGTTC
3' ss Score
10.52
Exon sequences
Seq C1 exon
GTGACCTGCAAACATAGACCTGAATATCTCGTCAAGCTACGGAACCCCTGGGGAAAGGTGGAATGGAAAGGAGACTGGAGTGACAG
Seq A exon
NA
Seq C2 exon
TTCAAGTAAATGGGAGCTGCTGAGCCCCAAGGAGAAGATTCTGCTTCTGAGGAAAGACAATGACGGAGAATTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000214711-12-16,13-16-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(9.5=100)
A:
NA
C2:
PF0064816=Peptidase_C2=FE(8.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGACCTGCAAACATAGACCTGA
R:
GGCTCAGCAGCTCCCATTTAC
Band lengths:
112-148
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains