HsaALTD1044463-2/2 @ hg38
Alternative 5'ss
Gene
ENSG00000214711 | CAPN14
Description
calpain 14 [Source:HGNC Symbol;Acc:HGNC:16664]
Coordinates
chr2:31194409-31197334:-
Coord C1 exon
chr2:31197249-31197334
Coord A exon
chr2:31197213-31197248
Coord C2 exon
chr2:31194409-31194483
Length
36 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
3' ss Seq
ATTCCCTTTTCTATTTTCAGTTC
3' ss Score
10.52
Exon sequences
Seq C1 exon
GTGACCTGCAAACATAGACCTGAATATCTCGTCAAGCTACGGAACCCCTGGGGAAAGGTGGAATGGAAAGGAGACTGGAGTGACAG
Seq A exon
GTGAACTTTGGGGACATCTTGGAGGGGTGAGAACAG
Seq C2 exon
TTCAAGTAAATGGGAGCTGCTGAGCCCCAAGGAGAAGATTCTGCTTCTGAGGAAAGACAATGACGGAGAATTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000214711-12-16,13-16-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(9.5=100)
A:
NA
C2:
PF0064816=Peptidase_C2=FE(8.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGACCTGCAAACATAGACCTGA
R:
GGCTCAGCAGCTCCCATTTAC
Band lengths:
112-148
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains