HsaEX6012752 @ hg38
Exon Skipping
Gene
ENSG00000214711 | CAPN14
Description
calpain 14 [Source:HGNC Symbol;Acc:HGNC:16664]
Coordinates
chr2:31193131-31197334:-
Coord C1 exon
chr2:31197249-31197334
Coord A exon
chr2:31194409-31194483
Coord C2 exon
chr2:31193131-31193294
Length
75 bp
Sequences
Splice sites
3' ss Seq
ATTCCCTTTTCTATTTTCAGTTC
3' ss Score
10.52
5' ss Seq
CTGGTATTG
5' ss Score
3.14
Exon sequences
Seq C1 exon
GTGACCTGCAAACATAGACCTGAATATCTCGTCAAGCTACGGAACCCCTGGGGAAAGGTGGAATGGAAAGGAGACTGGAGTGACAG
Seq A exon
TTCAAGTAAATGGGAGCTGCTGAGCCCCAAGGAGAAGATTCTGCTTCTGAGGAAAGACAATGACGGAGAATTCTG
Seq C2 exon
GATGACGCTGCAGGACTTTAAAACACATTTCGTGCTCCTGGTTATCTGTAAACTGACCCCAGGCCTGTTGAGCCAGGAGGCGGCCCAGAAGTGGACGTACACCATGCGGGAGGGGAGATGGGAGAAGCGGAGCACAGCTGGTGGCCAGAGGCAGTTGCTGCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000214711-'12-17,'12-16,14-17
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(9.5=100)
A:
PF0064816=Peptidase_C2=FE(8.5=100)
C2:
PF0064816=Peptidase_C2=PD(6.5=33.9),PF0106717=Calpain_III=PU(16.4=44.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCGTCAAGCTACGGAACCC
R:
CGCATGGTGTACGTCCACTTC
Band lengths:
168-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains