GgaEX0013321 @ galGal3
Exon Skipping
Gene
ENSGALG00000009069 | CAPN14
Description
NA
Coordinates
chr3:7656062-7658988:+
Coord C1 exon
chr3:7656062-7656147
Coord A exon
chr3:7657374-7657448
Coord C2 exon
chr3:7658825-7658988
Length
75 bp
Sequences
Splice sites
3' ss Seq
CCCATACTTTTTGCCCTCAGCTC
3' ss Score
8.4
5' ss Seq
CTGGTAACA
5' ss Score
4.6
Exon sequences
Seq C1 exon
GTGACCTGCCAATATGGACCAGAAAACCTAGTGAGACTGAGAAATCCATGGGGTAAAATTGAATGGAACGGAGACTGGAGTGACAG
Seq A exon
CTCTTACAAGTGGGAGTTGCTGAGCCCAAAGGAGAAAATTCTGCTGAGGAAAAAGAAGGAAGATGGAGAGTTCTG
Seq C2 exon
GATGTCTCTGCAAGATTTTAAGATTCATTTTGTAGACGTTGTGATCTGTAAATTAACTCCAGACCTGGTGAGCCAGGAAGATGGGAAAAAGTGGATGTATTCCCTGAAGAATGGGAGATGGGTTAAAGGAAGCACAGCAGGAGGAAGTCTGGGATTCTCCAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009069-'6-7,'6-6,7-7
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(9.3=100)
A:
PF0064816=Peptidase_C2=FE(8.3=100)
C2:
PF0064816=Peptidase_C2=PD(6.3=33.9),PF0106717=Calpain_III=PU(16.3=44.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAACGGAGACTGGAGTGACA
R:
GACTTCCTCCTGCTGTGCTTC
Band lengths:
171-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]