BtaEX6044952 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015865 | CAPN14
Description
Bos taurus calpain 14 (CAPN14), mRNA. [Source:RefSeq mRNA;Acc:NM_001192425]
Coordinates
chr11:68694091-68699038:+
Coord C1 exon
chr11:68694091-68694176
Coord A exon
chr11:68697624-68697698
Coord C2 exon
chr11:68698875-68699038
Length
75 bp
Sequences
Splice sites
3' ss Seq
CATTTCTTTTCTGTTTTCAGCTC
3' ss Score
10.66
5' ss Seq
CTGGTATTT
5' ss Score
3.5
Exon sequences
Seq C1 exon
GTGACCACCAGACATGGACCTGAGTATCTCGTCAGGCTCCGGAACCCCTGGGGGAAGATAGAGTGGAAAGGAGACTGGAGTGACAG
Seq A exon
CTCGAGTATGTGGGACCTACTGAGCCCCAAGGAGAAGATTCTGCTGCTGAGAAAAGATGATGATGGAGAATTCTG
Seq C2 exon
GATGTCACTGCAGGACTTTAAAGCACATTTCATGCTTCTGGTCATCTGTAAACTGAGCCCAGGCCTGCTGACTCAGGAGGTGGGCCAGAAGTGGTCGTACACCATGCTGGAGGGGAGATGGGAGAATGGGAGGACTGCTGGTGGCCAGATGAAGTCGCCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015865-'7-11,'7-10,8-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.107
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(9.5=100)
A:
PF0064816=Peptidase_C2=FE(8.5=100)
C2:
PF0064816=Peptidase_C2=PD(6.5=33.9),PF0106717=Calpain_III=PU(16.4=44.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGTATCTCGTCAGGCTCCG
R:
CTCCCCTCCAGCATGGTGTA
Band lengths:
183-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]