HsaALTD1047304-1/3 @ hg38
Alternative 5'ss
Gene
ENSG00000249471 | ZNF324B
Description
zinc finger protein 324B [Source:HGNC Symbol;Acc:HGNC:33107]
Coordinates
chr19:58451604-58453822:+
Coord C1 exon
chr19:58451604-58451704
Coord A exon
NA
Coord C2 exon
chr19:58453696-58453822
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTACGG
5' ss Score
10.26
3' ss Seq
CCACCTCCCTGCTGTTTTAGGAC
3' ss Score
11.56
Exon sequences
Seq C1 exon
ACTTCCGGCGTTGGGACTGTCACTTGGCTGCTCGCGTCAGGCCACACCGGTGGTCTGGGCTGTGGCGCGCGGGTCGGGGCCCGAGGCGGGCGGCCAGGAAG
Seq A exon
NA
Seq C2 exon
GACCTGATGACCTTCGAGGATGTGGCCGTGTACTTCTCCCAGGAGGAGTGGGGGCTCCTGGACACAGCGCAGAGGGCCCTGTACCGCCACGTGATGCTGGAAAACTTCACACTTGTGACCTCACTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000249471-0-2,1-2,2-2-1/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0135222=KRAB=WD(100=100.0)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGGGACTGTCACTTGGCTG
R:
GCCACATCCTCGAAGGTCATC
Band lengths:
118-157
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains