HsaINT0186866 @ hg38
Intron Retention
Gene
ENSG00000249471 | ZNF324B
Description
zinc finger protein 324B [Source:HGNC Symbol;Acc:HGNC:33107]
Coordinates
chr19:58451604-58453822:+
Coord C1 exon
chr19:58451604-58451704
Coord A exon
chr19:58451705-58453695
Coord C2 exon
chr19:58453696-58453822
Length
1991 bp
Sequences
Splice sites
5' ss Seq
AAGGTACGG
5' ss Score
10.26
3' ss Seq
CCACCTCCCTGCTGTTTTAGGAC
3' ss Score
11.56
Exon sequences
Seq C1 exon
ACTTCCGGCGTTGGGACTGTCACTTGGCTGCTCGCGTCAGGCCACACCGGTGGTCTGGGCTGTGGCGCGCGGGTCGGGGCCCGAGGCGGGCGGCCAGGAAG
Seq A exon
GTACGGACCACGAGCAGCCGGCCGCGCCCCCAAGCCTCGGTATCTTCGAGTATGACGTGGTCGGCCCGGGGGCGGTCGGGCCCCGGCGGGAACCACGCGTTCTCCCGCCCCGCGGAAGCCCAGGAGGCAGCGCATTGGGCATTCTGCGCCCATGACTGCCGGGCAGGCTGAGGCGCGGGGCAGCCGCGGGAGGCTGCTGGCGGGGATGGCGGTCCCGGGTGGTCCATGCCTTTCTTCCCTCCCAGTTGCGGGTTCCGCTGGCGGCGGTGGCGCTGACAAGCCCGCGCCGGGGGGGCGGGGGAGTCCCTGCTCACACAGACTGCGCCCCCACGGAGTGAGGCCGCTTCCTAGACCTCGCCTAGTCGTCTTTCCTCTCCCTGCCCTGGGGGGGTTGCGGGGGTCAGTGCAAACTCCTGCGTCCAGGGCACTGGTGAGCTCCCGACTTCCGGCAGCCAGGGGGCTGAGGTCCCGAAGGAGGCTCCGAGGGGAGAGTCCTGCGTGTGCAAAACCTGGGAGGGGAGCCGAAGCCCAGATGCTTCTGGGACTGAGCGCTCTCGATGTGGAGCTGGAGTAGAGGGGATGTGTGCGGCTGCAGTAGCAGGCGAGGGAGTGGGCTTTATCTCGAGGGCGTCGGGAGACATAGAAGTTTTGAACAGAATCAGGACATCCTCTGAGTTGGGACTTTAAAACGGTTCCACCGTTTGTTGCGTGGAGAACAGACATGCAGGGGTGTCGGCATGAAGGGAAGAACCGACTGCCACAGTCTGGGCAGCAGTGGAGGTGGGCGACCAGGTGAATTCTGGTGGATCTGCGGATGCATCAGGTGTGGGCTGTTTGAAGAACTAAGTACCCCATGTTGTTCAGCCTGAGCGCCTGGAAGAAGAGAGCTGCTGTAGATAGAAAGGAGAATTGAAAGGAAAGCAGGTTTCCTTCAGGGGAAAGATCAAGAGTCTGGGATGTCCCAGGTTGGTCATGTCACTGGACCTGACGTTGTTGGTGTCCTGGGCTGAGGACAGGGCCTATAAACTGGACTGAAGAAGGCGATGAGCAGTCAGGCGTGCGGAGTTACAGCTTGAGGGTAAAGAAAACCGGCTGGGGTGCCTGAGGCTATCAGGGGAGGAGTTCGGCAGGTGGCTGAATAGGAGAGGGTGGCAGCAATGTGGGAAAGAAATTGCGGGAGCGCTGAGATCGAGACCATCCTGGCTCACACAGTGAAACCCGGTCTCTACTAAAAATCCAAAAAAATTAGCCAGGTGTGGTGGCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGCCGGAGCTTGCAGTGAGCCGAGATTGCCCCACTGCACTCCAGCCTGGGTGACGGAGTGAGACTCCGTCTCCAAAATAAAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATTGAGGAGGGGGCGCCATGTGGAGGGAGGAAGGGATTGAGTTCCCCTGTGTTCACAGGTTCTTGGGGCTGCACCCCTATGACGACTGGTGGGGATCATCCAGTCCCTCAGGCTGGATGAGCAGCCTGGAAATGTCAGGCAAGCGCAGCAGGGGAAGGTCTCAGTGATGGGCATGCCTGGGGGGTCCACAGCTGGGACTTACACCCTTGCTTATTACAAAAGCAAGAAGGGCACATCTGGGGAGGGTCATGAATGGTCATGCTGAGTCACGAGTGGATATTTGGGGCTGCCCTTGGTGTGGCAGCTAAGGGCCCAGCCAGGGCTTGCTCTAGCCTGCTTGTGTAGGGGTGGCCAGTGGGGAAGTCAAGAAGCCATCTGGGGCCTGGACCAGGAGGGCAGAGGGGAGGGGTCCCAGACAGGTGAGGGAAGTGCCACCTGAAGATAATCTCGGGGTGGAACCCAAGGAAGGAGGGACACTGGGGGAGGTGACTGTTGGGATGGGGAGCTTGGTCCTGGCTCACAGCCATACCTTAGACCATGCCTACCTCCACCTCCCTGCTGTTTTAG
Seq C2 exon
GACCTGATGACCTTCGAGGATGTGGCCGTGTACTTCTCCCAGGAGGAGTGGGGGCTCCTGGACACAGCGCAGAGGGCCCTGTACCGCCACGTGATGCTGGAAAACTTCACACTTGTGACCTCACTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000249471:ENST00000336614:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0135222=KRAB=WD(100=100.0)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTCCGGCGTTGGGACT
R:
ACAAGTGTGAAGTTTTCCAGCA
Band lengths:
217-2208
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains