HsaALTD1050845-2/2 @ hg38
Alternative 5'ss
Gene
ENSG00000233175 | CTD-2020K17.3
Description
NA
Coordinates
chr17:45240315-45241211:-
Coord C1 exon
chr17:45241111-45241211
Coord A exon
chr17:45240946-45241110
Coord C2 exon
chr17:45240315-45240604
Length
165 bp
Sequences
Splice sites
5' ss Seq
AAGGTACCA
5' ss Score
7.87
3' ss Seq
AGCGCCACTTGCTCCTGCAGTTC
3' ss Score
6.98
Exon sequences
Seq C1 exon
TTGCGCGCCTGGCTTAGCTGTTTTTCCAGTTCTGCAATCTTGGCCATGGATTCGTTCTCCGCGTCCCGAAGCCGCTCTGTCAGCTGTAGCACCAGCACATG
Seq A exon
GTGAGCCCCGACCCGCAGCCCGGCACTGGCACCGCCGGTGAGGGGGCGGCATCAGGCATGCCTGCCTGGAAGACTGGGGGAGGCTCCCAGATCCGCTCAGCCCAGGTGCCAAGGGTGGGCCGAGCCTGGCACTCGAACCCAAGCAAATAAGGAGAGGAAACCAAG
Seq C2 exon
TTCCTCCATGTGCTCCAGCACAGCGTTCTTGGTCTCTGTGTCCTCCAGCAGCGCCCCCACATCAAAAATATTGTCCAGGTACGCCTGGATCTGCACCTGCAGCTTGTCACTCTCGGTGAGCCGAAGCCTCTGTCCCCCAGATGGAAGGAGTGGGGTGAGGCCTGGTGTGTGTGTGGGGGGGAGTCTTTCCAAACCACCCCCCTGCCACCACTGCCATCCAGAGGAAGGGGCCTGAGCCCTAGCCTACTTTTTCTTTATTTTTTAATATATAATTCACAAATCATAAAATC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000233175-0-1,1-1-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCCTGGCTTAGCTGTTTTTC
R:
CTCACCCCACTCCTTCCATCT
Band lengths:
255-420
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains